Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| THCA | rs12120457 | chr1:156961142 | C/T | 2.63E-6 | 489 | 16.63 | 15.3 | 12.67 | KM Plot |
| THCA | rs12121377 | chr1:45907138 | C/T | 2.75E-9 | 484 | 16.38 | 13.87 | 10.57 | KM Plot |
| THCA | rs12122147 | chr1:74838630 | T/C | 8.62E-9 | 485 | 15.68 | 16.73 | 15.3 | KM Plot |
| THCA | rs12122442 | chr1:156899682 | G/A | 6.82E-7 | 480 | 16.63 | 14.87 | 11.3 | KM Plot |
| THCA | rs12123275 | chr1:41559065 | A/G | 3.61E-12 | 489 | 17.7 | 17.75 | 14.93 | KM Plot |
| THCA | rs12123350 | chr1:45968686 | C/G | 8.06E-8 | 485 | 16.48 | 12.63 | 10.6 | KM Plot |
| THCA | rs12127987 | chr1:91819480 | G/A | 7.76E-6 | 490 | 17.77 | 16.68 | 15.67 | KM Plot |
| THCA | rs12128081 | chr1:74830885 | A/T | 5.13E-9 | 490 | 15.93 | 16.4 | 15.3 | KM Plot |
| THCA | rs12128412 | chr1:102739020 | T/C | 0.000256 | 487 | 15.48 | 16.57 | 26.68 | KM Plot |
| THCA | rs12128868 | chr1:156919180 | A/G | 1.96E-6 | 488 | 16.6 | 15.68 | 11.48 | KM Plot |
| THCA | rs12132684 | chr1:156927751 | T/C | 2.29E-7 | 487 | 16.97 | 14.93 | 12.67 | KM Plot |
| THCA | rs12134258 | chr1:224412157 | C/T | 0.000229 | 490 | 11.48 | 14.38 | 16.8 | KM Plot |
| THCA | rs12134439 | chr1:157044651 | C/T | 7.18E-8 | 483 | 16.8 | 14.93 | 11.3 | KM Plot |
| THCA | rs12135744 | chr1:48812953 | A/C | 7.67E-5 | 490 | 14.78 | 14.77 | 17.83 | KM Plot |
| THCA | rs12135799 | chr1:74795520 | G/C | 5.4E-9 | 489 | 15.93 | 15.7 | 15.3 | KM Plot |